Source: GWASDB

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs9989419
rs9989419 		0.882 0.120 16 56951227 regulatory region variant A/G snv 0.55
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 6 2008 2014
dbSNP: rs5880
rs5880
CETP
0.827 0.040 16 56981179 missense variant G/C snv 5.2E-02 3.7E-02
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 4 2008 2014
dbSNP: rs11216230
rs11216230
SIK3
11 117014073 intron variant G/A snv 3.1E-02
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2014 2014
dbSNP: rs12594733
rs12594733
RORA
15 60952685 intron variant T/C snv 0.25
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2014 2014
dbSNP: rs78557978
rs78557978 		4 114717445 upstream gene variant G/A;C snv
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2014 2014
dbSNP: rs3764261
rs3764261 		0.732 0.280 16 56959412 upstream gene variant C/A snv 0.31
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 8 2008 2013
dbSNP: rs1532085
rs1532085
ALDH1A2
0.882 0.080 15 58391167 intron variant A/G;T snv
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 6 2009 2013
dbSNP: rs964184
rs964184
ZPR1
0.716 0.440 11 116778201 3 prime UTR variant G/C snv 0.82
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 6 2009 2013
dbSNP: rs12678919
rs12678919 		0.882 0.080 8 19986711 intergenic variant A/G snv 1.0E-01
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 5 2009 2013
dbSNP: rs1800775
rs1800775
CETP
0.790 0.240 16 56961324 upstream gene variant C/A;G snv 0.51; 5.7E-06
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 5 2008 2013
dbSNP: rs1883025
rs1883025
ABCA1
0.807 0.120 9 104902020 intron variant C/T snv 0.28
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 5 2009 2013
dbSNP: rs4846914
rs4846914
GALNT2
0.925 0.080 1 230159944 intron variant G/A snv 0.45
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 5 2008 2013
dbSNP: rs1532624
rs1532624
CETP
0.851 0.160 16 56971567 intron variant C/A snv 0.34
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 4 2009 2013
dbSNP: rs1800961
rs1800961
HNF4A
0.851 0.160 20 44413724 missense variant C/T snv 3.1E-02 2.5E-02
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 4 2009 2013
dbSNP: rs2954029
rs2954029 		0.807 0.160 8 125478730 intron variant A/T snv 0.42
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 4 2010 2013
dbSNP: rs17145738
rs17145738
TBL2
0.851 0.200 7 73568544 3 prime UTR variant C/T snv 0.11
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 3 2010 2013
dbSNP: rs711752
rs711752
CETP
1.000 0.040 16 56962299 splice region variant G/A;C snv
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 3 2008 2013
dbSNP: rs11613352
rs11613352
R3HDM2
0.827 0.160 12 57398797 intron variant C/T snv 0.19
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 2 2010 2013
dbSNP: rs11869286
rs11869286
STARD3
0.925 0.080 17 39657603 intron variant G/C snv 0.52
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 2 2010 2013
dbSNP: rs12328675
rs12328675
COBLL1
2 164684290 3 prime UTR variant T/C snv 0.13
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 2 2010 2013
dbSNP: rs12967135
rs12967135 		18 60181790 intergenic variant G/A snv 0.24
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 2 2010 2013
dbSNP: rs13107325
rs13107325
SLC39A8
0.776 0.520 4 102267552 missense variant C/A;T snv 4.0E-06; 4.5E-02
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 2 2010 2013
dbSNP: rs1689800
rs1689800
LINC01344
1 182199750 intron variant A/G snv 0.34
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 2 2010 2013
dbSNP: rs16942887
rs16942887
PSKH1
16 67894139 intron variant G/A snv 0.15
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 2 2010 2013
dbSNP: rs174546
rs174546
FADS1 ; FADS2
0.807 0.200 11 61802358 3 prime UTR variant C/T snv 0.28
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 2 2010 2013